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Quick Start Guide

  • 📦 Installation
  • 📖 Common Workflows by Task
  • 🔄 Typical Workflow
  • 📥 Testing GraTools
  • ⚠️ Troubleshooting
  • 📬 Further Assistance

Use Cases

  • 1 — Graph Description
  • 2 — Subgraph & FASTA Extraction
  • 3 — Core/Dispensable & Groups
  • 4 — Advanced Pangenome Size Analysis

Advanced Usage

  • GFA Content Information
  • GFA Data Extraction
  • GFA Analysis
  • Other Commands

GraTools for developers

  • Developer API Reference

References

  • How to Cite GraTools
  • References
GraTools
  • Overview: module code

All modules for which code is available

  • gratools.Graph
  • gratools.Gratools
  • gratools.gfa_extract
  • gratools.logger_config
  • gratools.useful_function

© Copyright 2024–2026, Sebastien Ravel (PHIM, CIRAD), Christine Tranchant-Dubreuil (DIADE, IRD), Camille Carrette (DIADE, IRD/SYNGENTA), Nina Marthe (DIADE, IRD), Mohamed Mourdas (DIADE, IRD), François Sabot (DIADE, IRD).